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slackbuilds-current/academic/flexbar
Rob van Nues b72f6369cc
academic/flexbar: Updated for version 3.5.0. 		7 years ago
..
README academic/flexbar: Added (barcode and adapter removal). 8 years ago
flexbar.SlackBuild academic/flexbar: Updated for version 3.5.0. 7 years ago
flexbar.info academic/flexbar: Updated for version 3.5.0. 7 years ago
slack-desc academic/flexbar: Added (barcode and adapter removal). 8 years ago

README 

The program Flexbar preprocesses high-throughput sequencing data 
efficiently. It demultiplexes barcoded runs and removes adapter 
sequences. Moreover, trimming and filtering features are provided. 
Flexbar increases read mapping rates and improves genome as well as 
transcriptome assemblies. It supports next-generation sequencing data 
in fasta and fastq format, e.g. from Roche 454 and the Illumina 
platform.

The script downloads the segan-library needed for compilation.

References

Johannes T. Roehr, Christoph Dieterich, Knut Reinert:
Flexbar 3.0 - SIMD and multicore parallelization. Bioinformatics 2017.

Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich:
Flexbar - flexible barcode and adapter processing for next-generation
sequencing platforms. Biology 2012.