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slackbuilds-current/academic

History

Robby Workman 7e716ade15 academic/qtoctave: Removed. Dead upstream and no longer needed. octave has its own gui now, in addition to this project being dead upstream (homepage is gone). Signed-off-by: Robby Workman <rworkman@slackbuilds.org>		6 years ago
..
CAFS_divergence	academic/CAFS_divergence: Added (functional shift clustering).	9 years ago
CAPS_coevolution	academic/CAPS_coevolution: Added (Coevolution Analysis).	9 years ago
Data2FCS	academic/Data2FCS: Added (Data2FCS and FCS2Data).	9 years ago
DendroPy	academic/DendroPy: Added (A Phylogenetic Computing Library).	6 years ago
EMBASSY	Multiple: update email, year and slack-desc	10 years ago
EMBOSS	academic/EMBOSS: Make .desktop validate.	9 years ago
FCSalyzer	academic/FCSalyzer: Updated for version 0.9.16_alpha.	7 years ago
FreeFem	academic/FreeFem: Added (non-linear multiphysics software).	6 years ago
Gblocks	academic/Gblocks: Fix download url.	8 years ago
GeoGebra	academic/GeoGebra: Update DEP.	7 years ago
Gridcoin-Research	academic/Gridcoin-Research: Updated for version 4.0.5.0.	6 years ago
HMMER	academic/HMMER: Updated for version 3.2.1.	7 years ago
ITK	academic/ITK: Add support for GCC 9.	6 years ago
Kst	academic/Kst: Update doinst.sh.	9 years ago
MetaPhlAn2	academic/RepeatMasker: Updated for version 4.0.9_p2.	6 years ago
Mnemosyne	academic/Mnemosyne: Updated for version 2.6.1.	7 years ago
OpenFOAM	academic/OpenFOAM: Updated for version 7.	6 years ago
PhyML	academic/PhyML: Updated for version 3.3.20190321.	6 years ago
PyAMG	academic/PyAMG: Update HOMEPAGE.	9 years ago
QtiPlot	academic/QtiPlot: Updated homepage.	8 years ago
R	academic/R: Updated for version 3.6.2.	6 years ago
RAxML	academic/RAxML: Added (Randomized Axelerated Maximum Likelihood).	6 years ago
RepeatMasker	academic/RepeatMasker: Updated for version 4.0.9_p2.	6 years ago
STAR	academic/STAR: Updated for version 2.7.3a.	6 years ago
SU2	academic/SU2: Added (Open Source CFD Code).	7 years ago
Shark	academic/Shark: Updated for version 4.0.0.	6 years ago
TreeGraph	academic/TreeGraph: Fix DOWNLOAD.	6 years ago
ViennaRNA	academic/ViennaRNA: Updated for version 2.4.14.	6 years ago
WEVOTE	academic/WEVOTE: Added (WEighted VOting Taxonomic idEntification).	7 years ago
WordNet	academic/WordNet: Switch homepage to https.	8 years ago
Xyce	academic/Xyce: Update info.	8 years ago
ZeGrapher	academic/ZeGrapher: Added (math graphing).	8 years ago
abella	academic/abella: Added (interactive theorem prover).	6 years ago
abntex	academic/abntex: New homepage.	9 years ago
aenig4	academic/aenig4: Updated for version 1.04.	7 years ago
aline	academic/aline: Fix README.	9 years ago
aliview	academic/aliview: Updated for version 1.26.	6 years ago
amd	academic/amd: Updated for SuiteSparse 5.4.0.	7 years ago
amplicon	academic/amplicon: Make .desktop validate.	9 years ago
amplifx	academic/amplifx: Fix README.	9 years ago
antiprism	academic/antiprism: Fix DOWNLOAD.	10 years ago
archaeopteryx	academic/archaeopteryx: Updated for version 0.9928b.	7 years ago
aris	various: Update find command to match template.	12 years ago
arka	academic/arka: Make .desktop validate.	9 years ago
armadillo	academic/armadillo: Updated for version 8.100.0.	8 years ago
arpack	academic/arpack: new maintainer.	9 years ago
arpack-ng	academic/arpack-ng: Updated for version 3.7.0.	7 years ago
artha	academic/artha: Mirror download url.	8 years ago
avl	academic/avl: Updated for version 3.36.	9 years ago
avogadro	academic/avogadro: Mirror download url.	8 years ago
bcftools	academic/bcftools: Added (BCF calling tools).	7 years ago
bedGraphToBigWig	academic/bedGraphToBigWig: Added (Convert bedGraph to bigWig file)	10 years ago
bedtools	academic/bedtools: Updated for version 2.28.0.	6 years ago
biblesync	academic/biblesync: Updated for version 2.0.1.	8 years ago
bibletime	academic/bibletime: Updated for version 3.0_beta2.	6 years ago
bibus	academic/bibus: New maintainer.	9 years ago
biopython	academic/biopython: Added (Python tools for biological computation).	6 years ago
boinc	academic/boinc: Updated for version 7.14.2.	7 years ago
bowtie	Multiple: update email, year and slack-desc	10 years ago
bowtie2	academic/bowtie2: Updated for version 2.3.5.1.	7 years ago
bowtie2-legacy	academic/bowtie2-legacy: Added (aligning sequencing reads).	7 years ago
bpp-core	academic/bpp-core: Updated for version 2.4.1.	7 years ago
bpp-phyl	academic/bpp-phyl: Updated for version 2.4.1.	7 years ago
bpp-phyl-omics	academic/bpp-phyl-omics: Updated for version 2.4.1.	7 years ago
bpp-popgen	academic/bpp-popgen: Updated for version 2.4.1.	7 years ago
bpp-seq	academic/bpp-seq: Updated for version 2.4.1.	7 years ago
bpp-seq-omics	academic/bpp-seq-omics: Updated for version 2.4.1.	7 years ago
bppsuite	academic/bppsuite: Updated for version 2.4.1.	7 years ago
btf	academic/btf: Updated for SuiteSparse 5.4.0.	7 years ago
bwa	academic/bwa: Updated for version 0.7.17.	8 years ago
cadabra2	academic/cadabra2: Updated for version 2.2.8.	6 years ago
calc	academic/calc: Update to 2.12.7.2	7 years ago
calcoo	academic/calcoo: Fix ownership.	8 years ago
camd	academic/camd: Updated for SuiteSparse 5.4.0.	7 years ago
cap3	Multiple: update email, year and slack-desc	10 years ago
cblas	academic/cblas: Updated for version 3.8.0.	8 years ago
ccolamd	academic/ccolamd: Updated for SuiteSparse 5.4.0.	7 years ago
celestia	academic/celestia: Allow VERSION override, i486=>i586.	9 years ago
chemtool	academic/chemtool: Update doinst.sh.	9 years ago
cholmod	academic/cholmod: Updated for version 3.0.13.	7 years ago
cistrome-CEAS	Multiple: update email, year and slack-desc	10 years ago
cistrome-MACS	Multiple: update email, year and slack-desc	10 years ago
cistrome-conductGO	academic/cistrome-conductGO: Fix ownership.	8 years ago
cistrome-extra	academic/cistrome-extra: Updated for version git_20170829_6334683.	8 years ago
cistrome-mdseqpos	academic/cistrome-mdseqpos: Updated for v. git_20170829_6334683.	8 years ago
clark-ugene	academic/clark-ugene: Updated for version git_6917bf9.	6 years ago
cld2	academic/cld2: Fix build on current.	8 years ago
clustalo	academic/clustalo: Updated for version 1.2.4.	9 years ago
clustalw	Multiple: update email, year and slack-desc	10 years ago
clustalx	academic/clustalx: Make .desktop validate.	9 years ago
colamd	academic/colamd: Updated for SuiteSparse 5.4.0.	7 years ago
convertall	academic/convertall: Update doinst.sh.	9 years ago
copasi	academic/copasi: Updated for version 4.26.213.	6 years ago
coq	academic/coq: Updated for version 8.5pl1.	9 years ago
cryptominisat	academic/cryptominisat: Updated for version 5.6.8.	7 years ago
csparse	academic/csparse: Updated for SuiteSparse 5.4.0.	7 years ago
cufflinks	academic/cufflinks: Update DEPS.	7 years ago
cutadapt	academic/cutadapt: Updated for version 1.14.	8 years ago
cvc4	academic/cvc4: Add missing run-antlr.	7 years ago
cxsparse	academic/cxsparse: Updated for SuiteSparse 5.4.0.	7 years ago
dakota	academic/dakota: Updated for version 6.8.	8 years ago
diamond	academic/diamond: Updated for version 0.9.25.	6 years ago
drawtiming	academic/drawtiming: Update doinst.sh.	9 years ago
ds9	academic/ds9: Updated for version 7.6.	8 years ago
easy_spice	academic/easy_spice: Use tgz.	8 years ago
ed-v6	academic/ed-v6: Added (old version of ed).	7 years ago
edsim51di	academic/edsim51di: Update DEP.	7 years ago
engauge	academic/engauge: Updated for version 10.10.	7 years ago
ent	academic/ent: Fix license URL.	9 years ago
eprover	academic/eprover: Added (a first-order theorem prover).	7 years ago
equalx	academic/equalx: Fix slack-desc.	9 years ago
ess	academic/ess: Updated for version 17.11.	7 years ago
evopedia_qt	academic/evopedia_qt: Fix slack-desc.	9 years ago
exonerate	academic/exonerate: Switch to https.	8 years ago
extrema	academic/extrema: New maintainer.	9 years ago
fann	academic/fann: Fix slack-desc.	9 years ago
fastqc	academic/fastqc: Updated for version 0.11.8 + new maintainer.	7 years ago
fet	academic/fet: Updated for version 5.42.1.	6 years ago
fiji	academic/fiji: Updated for version 20190718.	6 years ago
finchtv	academic/finchtv: Updated for version 1.3.1.	8 years ago
fityk	academic/fityk: Added (nonlinear curve fitting).	9 years ago
flann	academic/flann: Updated for version 1.9.1 + new maintainer.	9 years ago
flashqard	academic/flashqard: Update doinst.sh.	9 years ago
flexbar	academic/flexbar: Updated for version 3.5.0.	7 years ago
free42	academic/free42: Updated for version 2.0.4.	8 years ago
freechartgeany	academic/freechartgeany: Update doinst.sh.	9 years ago
g3data	academic/g3data: new maintainer.	9 years ago
galculator	academic/galculator: Fix download url.	8 years ago
gaw3	academic/gaw3: Updated for version 20170716.	8 years ago
gcalctool	academic/gcalctool: Update HOMEPAGE url.	9 years ago
gchemutils	academic/gchemutils: Updated for version 0.14.17.	7 years ago
gcompris	academic/gcompris: Updated for version 17.05.	8 years ago
geda-gaf	academic/geda-gaf: Update doinst.sh.	9 years ago
gelemental	academic/gelemental: Updated for version 2.0.0.	6 years ago
geneconv	academic/geneconv: Switch to https.	8 years ago
genius	academic/genius: Updated for version 1.0.23.	8 years ago
genometools	academic/genometools: Updated for version 1.5.10.	7 years ago
genpak	Multiple: update email, year and slack-desc	10 years ago
geomview	academic/geomview: Fix slack-desc.	9 years ago
gerbv	academic/gerbv: Update doinst.sh.	9 years ago
ggobi	academic/ggobi: Allow VERSION override, i486=>i586.	9 years ago
ghemical	academic/ghemical: Update doinst.sh.	9 years ago
glpk	academic/glpk: Updated for version 4.61 + new maintainer.	9 years ago
gnucap	academic/gnucap: Update doinst.sh.	9 years ago
gp2fasta	academic/gp2fasta: Update HOMEPAGE and DOWNLOAD urls.	8 years ago
gpredict	academic/gpredict: Updated for version 2.3.	7 years ago
grace	academic/grace: i486=>i586.	9 years ago
gresistor	academic/gresistor: Updated homepage	9 years ago
gretl	academic/gretl: Updated for version 2017c.	8 years ago
gri	academic/gri: Updated for version 2.0.1.	6 years ago
grpn	academic/grpn: Fix slack-desc.	9 years ago
gspiceui	academic/gspiceui: Updated for version 1.2.36.	6 years ago
gtkwave	academic/gtkwave: Fix slack-desc.	9 years ago
gtypist	academic/gtypist: Make .desktop validate.	9 years ago
gwyddion	academic/gwyddion: Updated for version 2.55.	6 years ago
h5utils	academic/h5utils: Added (visualization and conversion of HDF5 data).	6 years ago
harminv	academic/harminv: Added (harmonic inversion from a time series).	6 years ago
hyphy	academic/hyphy: Updated for version 2.3.14.	7 years ago
iTest	academic/iTest: Fix slack-desc.	9 years ago
io_lib	academic/io_lib: Updated for version 1.14.9.	9 years ago
irsim	academic/irsim: Fix slack-desc.	9 years ago
isoelectric-point	academic/isoelectric-point: Update homepage and download.	7 years ago
itex2mml	academic/itex2mml: Remove obsolete patch.	8 years ago
jalview	academic/jalview: Updated for version 2.10.0b1.	9 years ago
jellyfish_k-mer	academic/jellyfish_k-mer: Added (k-mers counting tools).	7 years ago
jpicedt	academic/jpicedt: Fix VERSION.	10 years ago
jugglinglab	academic/jugglinglab: Make .desktop validate.	9 years ago
karma	academic/karma: Fix library issue.	8 years ago
kile	academic/kile: Update doinst.sh.	9 years ago
kiwisolver	academic/kiwisolver: Added (Cassowary algorithm).	7 years ago
klavaro	academic/klavaro: Updated for version 3.03.	6 years ago
klu	academic/klu: Updated for SuiteSparse 5.4.0.	7 years ago
knime	academic/knime: Fix ownership.	8 years ago
kraken	academic/kraken: Updated for version 1.1.1.	6 years ago
ktikz	academic/ktikz: Update doinst.sh.	9 years ago
kurso	academic/kurso: Update doinst.sh.	9 years ago
labplot2	academic/labplot2: Updated for version 2.4.0.	9 years ago
ladr	academic/ladr: Switch homepage and download to https.	7 years ago
lalnview	academic/lalnview: Fix README.	9 years ago
lapack95	academic/lapack95: New maintainer.	9 years ago
lapacke	academic/lapacke: Build the deprecated routines.	7 years ago
latex2html	academic/latex2html: Added manual doc.	6 years ago
ldl	academic/ldl: Updated for SuiteSparse 5.4.0.	7 years ago
libghemical	various: Update find command to match template.	12 years ago
libqalculate	academic/libqalculate: Updated for version 3.4.0	6 years ago
link-grammar	academic/link-grammar: Update DEP.	9 years ago
locarna	academic/locarna: Updated for version 1.9.2.3.	6 years ago
loggerpro	academic/loggerpro: Update homepage.	7 years ago
lpsolve	academic/lpsolve: Updated for version 5.5.2.5.	9 years ago
mafft	academic/mafft: Updated for version 7.429.	6 years ago
magic	academic/magic: Added (A VLSI layout design tool).	9 years ago
mathics	academic/mathics: Updated for version 1.0.	9 years ago
mathomatic	academic/mathomatic: Fix slack-desc.	9 years ago
matio	academic/matio: Added (MAT File I/O Library).	9 years ago
maxima	academic/maxima: Updated for version 5.39.0 + new maintainer.	9 years ago
meep	academic/meep: Added (electromagnetics simulation using FDTD).	6 years ago
megax	academic/megax: Updated for version 10.0.5_1.	7 years ago
meme-suite	academic/meme-suite: Added (Motif based sequence analysis tools).	8 years ago
mendeleydesktop	academic/mendeleydesktop: Updated homepage link.	9 years ago
metis	academic/metis: Updated for version 5.1.0.	9 years ago
mkDSSP	Multiple: update email, year and slack-desc	10 years ago
mrbayes	academic/mrbayes: Updated for version 3.2.7a.	6 years ago
muscle	academic/muscle: Updated for version 3.8.1551.	6 years ago
ncbi-blast	academic/ncbi-blast: Update script.	7 years ago
ncbi-blast+	academic/ncbi-blast+: Updated for version 2.9.0.	6 years ago
ncbi-rmblastn	academic/ncbi-rmblastn: Update DEP.	7 years ago
ncview	academic/ncview: Added (a netCDF visual browser).	8 years ago
ngspice	academic/ngspice: Fix Download.	6 years ago
novocraft	academic/novocraft: Updated for version 3.09.03.	6 years ago
octave	academic/octave: Update DEP.	7 years ago
pal2nal	academic/pal2nal: Updated for version 14.1.	8 years ago
paml	academic/paml: Updated for version 4.9h.	7 years ago
pamlX	academic/pamlX: Updated to build with paml-4.9h.	7 years ago
papi	academic/papi: Fixed ownership.	8 years ago
pari	academic/pari: Updated for version 2.11.1.	6 years ago
parmetis	academic/parmetis: Update info.	8 years ago
patsy	academic/patsy: Fix slack-desc.	9 years ago
pcb	academic/pcb: Updated for version 4.0.2.	8 years ago
perlprimer	academic/perlprimer: Updated for version 1.2.4.	6 years ago
pianobooster	academic/pianobooster: i486 => i586.	9 years ago
plasmidomics	Multiple: update email, year and slack-desc	10 years ago
prank-msa	academic/prank-msa: Updated for version 170427.	8 years ago
primer3	academic/primer3: Updated for version 2.4.0.	7 years ago
pspp	academic/pspp: Updated for version 1.2.0.	7 years ago
pulseview	academic/pulseview: Updated for version 0.4.1.	7 years ago
pyCRAC	academic/pyCRAC: Updated for version 1.4.6.	6 years ago
pyfits	academic/pyfits: Update homepage.	7 years ago
pysam	academic/pysam: Updated for version 0.15.3.	6 years ago
qalculate-gtk	academic/qalculate-gtk: Updated for version 3.4.0	6 years ago
qcl	academic/qcl: Added (A Programming Language for Quantum Computers).	8 years ago
qhull	academic/qhull: Updated for version 2015.2.	8 years ago
qrupdate	academic/qrupdate: Update URLs and patches.	7 years ago
qucs	academic/qucs: Noted orphan status (no SBo maintainer).	7 years ago
rbio	academic/rbio: Updated for SuiteSparse 5.4.0.	7 years ago
reduce-algebra	academic/reduce-algebra: Updated for version 20190915svn5129.	6 years ago
root	academic/root: Fix slack-desc.	9 years ago
sage	academic/sage: Unmaintained.	7 years ago
sage-bin	academic/sage-bin: Added (python based mathematics software).	7 years ago
samtools	academic/samtools: Updated for version 1.9 + new maintainer.	7 years ago
samtools-legacy	academic/samtools-legacy: Fix path.	7 years ago
scidavis	academic/scidavis: Updated for version 1.26.	6 years ago
scilab	academic/scilab: Updated for version 6.0.2.	6 years ago
scipy	academic/scipy: Update script.	7 years ago
scipy3	academic/scipy3: Updated for version 1.1.0.	7 years ago
seaview	academic/seaview: Updated for version 4.7.	7 years ago
sequence-analysis	academic/sequence-analysis: Make .desktop validate.	9 years ago
sigrok-cli	academic/sigrok-cli: Updated for version 0.7.1.	7 years ago
siril	academic/siril: Fix doc ownership, use our cflags.	8 years ago
slatec	various: Update find command to match template.	12 years ago
smath-studio	academic/smath-studio: Changed maintainer.	7 years ago
snpEff	academic/snpEff: Updated for version 4.3t.	8 years ago
solfege	academic/solfege: Update HOMEPAGE and DOWNLOAD urls.	9 years ago
spades	academic/spades: Updated for version 3.13.0.	7 years ago
speedcrunch	academic/speedcrunch: Fixed tarball handling.	8 years ago
spiceopus	academic/spiceopus: Update doinst.sh.	9 years ago
spidey	academic/spidey: Update HOMEPAGE.	9 years ago
spqr	academic/spqr: Updated for version 2.0.9.	7 years ago
squizz	academic/squizz: Updated for version 0.99d.	9 years ago
staden	academic/staden: Updated for version 2.0.0b11.	9 years ago
stellarium	academic/stellarium: Updated for version 0.18.1.	7 years ago
stringtie	academic/stringtie: Updated for version 1.3.6.	6 years ago
suitesparse	academic/suitesparse: Updated for version 5.4.0	7 years ago
suitesparseconfig	academic/suitesparseconfig: Updated for version 5.4.0.	7 years ago
sundials	academic/sundials: Updated for version 3.1.1.	7 years ago
sword	academic/sword: Fix for newer icu4c.	8 years ago
sword-data-kjv	academic/sword-data-kjv: Updated for version 1.8.1.	8 years ago
t_coffee	academic/t_coffee: Updated for version 13.00_git33cdeb8.	6 years ago
tabix	academic/tabix: Fix slack-desc.	9 years ago
tabix-legacy	academic/tabix-legacy: Added (Generic indexer).	7 years ago
tilem	academic/tilem: Allow VERSION override, i486=>i586.	9 years ago
tilem2	academic/tilem2: Fix ownership.	8 years ago
tkgate	academic/tkgate: Mirror download url.	8 years ago
topdraw	Multiple: update email, year and slack-desc	10 years ago
tophat	academic/tophat: Updated for version 2.1.2.	6 years ago
treeviewx	academic/treeviewx: Added (Program to display phylogenetic trees).	7 years ago
trfind	academic/trfind: Fix executable for use with RepeatMasker.	8 years ago
trimmomatic	academic/trimmomatic: Added (Trimming Tool).	7 years ago
tuxmath	academic/tuxmath: Update homepage.	7 years ago
tuxtype2	academic/tuxtype2: Update homepage.	7 years ago
ucsc-blat	academic/ucsc-blat: Update HOMEPAGE.	9 years ago
ugene	academic/ugene: Updated for version 1.32.0.	6 years ago
umfpack	academic/umfpack: Updated for version 5.7.8.	7 years ago
units	academic/units: Updated for version 2.19.	6 years ago
vcftools	academic/vcftools: Updated for version 0.1.16.	7 years ago
verilog	various: Update find command to match template.	12 years ago
veusz	academic/veusz: Updated for version 3.1.	6 years ago
wehi-cellsymphony	academic/wehi-cellsymphony: Make .desktop validate.	9 years ago
wehi-deid	academic/wehi-deid: Make .desktop validate.	9 years ago
wehi-hackit	academic/wehi-hackit: Make .desktop validate.	9 years ago
wehi-weasel	academic/wehi-weasel: Updated for version 3.5.0.17.	7 years ago
wmcalc	academic/wmcalc: Updated for version 0.7.	7 years ago
wxMaxima	academic/wxMaxima: Switch homepage to https.	7 years ago
wxmacmolplt	academic/wxmacmolplt: Update doinst.sh.	9 years ago
xcircuit	academic/xcircuit: Fix slack-desc.	9 years ago
xephem	academic/xephem: Make .desktop validate.	9 years ago
xflr5	academic/xflr5: Updated for version 6.43.	7 years ago
xfoil	academic/xfoil: Added (program for design and analysis of airfoils).	9 years ago
xiphos	academic/xiphos: Updated for version 4.1.0.	8 years ago
xoscope	academic/xoscope: Updated for version 2.2.	9 years ago
z3	academic/z3: Added (theorem solver).	7 years ago
zotero	academic/zotero: Updated for version 5.0.73.	6 years ago