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			academic/treeview: Removed (renamed to treeviewx).
			
				
		academic/treeview: Removed (renamed to treeviewx).
	
		
	
			
				Signed-off-by: David Spencer <idlemoor@slackbuilds.org>pull/47/head
							committed by
							
								 David Spencer
								David Spencer
							
						
					
				
				 9 changed files with 0 additions and 244 deletions
			
			
		- 
					19academic/treeview/README
- 
					3academic/treeview/References
- 
					71academic/treeview/cstring.patch
- 
					3academic/treeview/doinst.sh
- 
					19academic/treeview/slack-desc
- 
					111academic/treeview/treeview.SlackBuild
- 
					8academic/treeview/treeview.desktop
- 
					10academic/treeview/treeview.info
- 
					BINacademic/treeview/treeview.png
| @ -1,19 +0,0 @@ | |||||
| TreeView X is a simple program for displaying phylogenies. Some of its |  | ||||
| features include: |  | ||||
| 
 |  | ||||
| - reads many different tree file formats (including NEXUS, PHYLIP, |  | ||||
|   Hennig86, NONA, MEGA, and ClustalW/X) |  | ||||
| - supports standard the TrueType and Postscript fonts |  | ||||
| - supports native graphics file format for copying pictures into |  | ||||
|   other applications, and for saving graphics files |  | ||||
| - print preview |  | ||||
| - can print multiple trees per page and/or one tree over more than |  | ||||
|   one page |  | ||||
| - has drag-and-drop facility for easy opening of files |  | ||||
| - Web-based online help |  | ||||
| - tree editor |  | ||||
| 
 |  | ||||
| For details and citation: |  | ||||
| Page, R. D. M. 1996. TREEVIEW: An application to display phylogenetic |  | ||||
| trees on personal computers. Computer Applications in the Biosciences |  | ||||
| 12: 357-358. |  | ||||
| @ -1,3 +0,0 @@ | |||||
| Page, R. D. M. 1996. TREEVIEW: An application to display phylogenetic |  | ||||
| trees on personal computers. Computer Applications in the Biosciences |  | ||||
| 12: 357-358 |  | ||||
| @ -1,71 +0,0 @@ | |||||
| --- tv-0.5.1/ncl-2.0/src/charactersblock.cpp.orig	2017-08-13 08:38:11.451581249 +0700
 |  | ||||
| +++ tv-0.5.1/ncl-2.0/src/charactersblock.cpp	2017-08-13 08:38:25.267599533 +0700
 |  | ||||
| @@ -8,6 +8,7 @@
 |  | ||||
|  #include "discretematrix.h" |  | ||||
|  #include "assumptionsblock.h" |  | ||||
|  #include "charactersblock.h" |  | ||||
| +#include <cstring>
 |  | ||||
|   |  | ||||
|  using namespace std; |  | ||||
|   |  | ||||
| --- tv-0.5.1/ncl-2.0/src/nexus.cpp.orig	2017-08-13 08:40:07.443734383 +0700
 |  | ||||
| +++ tv-0.5.1/ncl-2.0/src/nexus.cpp	2017-08-13 08:40:17.625747774 +0700
 |  | ||||
| @@ -2,6 +2,7 @@
 |  | ||||
|  #include "xnexus.h" |  | ||||
|  #include "nexustoken.h" |  | ||||
|  #include "nexus.h" |  | ||||
| +#include <cstring>
 |  | ||||
|   |  | ||||
|  #define NCL_NAME_AND_VERSION  "NCL version 2.01" |  | ||||
|  #define NCL_COPYRIGHT         "Copyright (c) 2000 by Paul O. Lewis" |  | ||||
| --- tv-0.5.1/ncl-2.0/src/nexustoken.cpp.orig	2017-08-13 08:41:41.569857692 +0700
 |  | ||||
| +++ tv-0.5.1/ncl-2.0/src/nexustoken.cpp	2017-08-13 08:41:52.463871895 +0700
 |  | ||||
| @@ -1,6 +1,7 @@
 |  | ||||
|  #include "nexusdefs.h" |  | ||||
|  #include "xnexus.h" |  | ||||
|  #include "nexustoken.h" |  | ||||
| +#include <cstring>
 |  | ||||
|   |  | ||||
|  using namespace std; |  | ||||
|   |  | ||||
| --- tv-0.5.1/ncl-2.0/src/nxsstring.cpp.orig	2017-08-13 08:42:36.847929712 +0700
 |  | ||||
| +++ tv-0.5.1/ncl-2.0/src/nxsstring.cpp	2017-08-13 08:42:48.870945321 +0700
 |  | ||||
| @@ -20,6 +20,7 @@
 |  | ||||
|  #include <stdio.h> |  | ||||
|  #include <assert.h> |  | ||||
|  #include <math.h> |  | ||||
| +#include <cstring>
 |  | ||||
|  #include "nxsstring.h" |  | ||||
|   |  | ||||
|  nxsstring& nxsstring::operator+=( const double d ) |  | ||||
| --- tv-0.5.1/TreeLib/Parse.cpp.orig	2017-08-13 08:43:50.188024809 +0700
 |  | ||||
| +++ tv-0.5.1/TreeLib/Parse.cpp	2017-08-13 08:44:00.407038015 +0700
 |  | ||||
| @@ -23,6 +23,7 @@
 |  | ||||
|    |  | ||||
|  #include <ctype.h> |  | ||||
|  #include "Parse.h" |  | ||||
| +#include <cstring>
 |  | ||||
|   |  | ||||
|  // Return the next token in the string |  | ||||
|  tokentype Parser::NextToken () |  | ||||
| --- tv-0.5.1/TreeLib/TreeLib.cpp.orig	2017-08-13 08:45:24.898146879 +0700
 |  | ||||
| +++ tv-0.5.1/TreeLib/TreeLib.cpp	2017-08-13 08:45:33.518157938 +0700
 |  | ||||
| @@ -23,6 +23,7 @@
 |  | ||||
|   |  | ||||
|  #include "TreeLib.h" |  | ||||
|  #include "Parse.h" |  | ||||
| +#include <cstdlib>
 |  | ||||
|   |  | ||||
|  #include <vector> |  | ||||
|   |  | ||||
| --- tv-0.5.1/TreeLib/treereader.cpp.orig        2017-08-13 08:47:09.041280171 +0700
 |  | ||||
| +++ tv-0.5.1/TreeLib/treereader.cpp     2017-08-13 08:51:04.192577614 +0700
 |  | ||||
| @@ -22,6 +22,8 @@
 |  | ||||
|   // $Id: treereader.cpp,v 1.5 2003/09/10 12:58:16 rdmp1c Exp $ |  | ||||
|   |  | ||||
|  #include "treereader.h" |  | ||||
| +#include <cstring>
 |  | ||||
| +#include <stdlib.h>
 |  | ||||
|   |  | ||||
|  #if __MWERKS__ |  | ||||
|         #include <string.h> |  | ||||
| @ -1,3 +0,0 @@ | |||||
| if [ -x /usr/bin/update-desktop-database ]; then |  | ||||
|   /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1 |  | ||||
| fi |  | ||||
| @ -1,19 +0,0 @@ | |||||
| # HOW TO EDIT THIS FILE: |  | ||||
| # The "handy ruler" below makes it easier to edit a package description. |  | ||||
| # Line up the first '|' above the ':' following the base package name, and |  | ||||
| # the '|' on the right side marks the last column you can put a character in. |  | ||||
| # You must make exactly 11 lines for the formatting to be correct.  It's also |  | ||||
| # customary to leave one space after the ':' except on otherwise blank lines. |  | ||||
| 
 |  | ||||
|         |-----handy-ruler------------------------------------------------------| |  | ||||
| treeview: treeview (Program to display phylogenetic trees) |  | ||||
| treeview: |  | ||||
| treeview: TreeView X provides a simple way to view the contents of a NEXUS, |  | ||||
| treeview: PHYLIP, Hennig86, Clustal, or other format tree file. |  | ||||
| treeview: |  | ||||
| treeview: Home: http://code.google.com/p/treeviewx/ |  | ||||
| treeview: References: /usr/doc/treeview-0.5/References |  | ||||
| treeview: |  | ||||
| treeview: |  | ||||
| treeview: |  | ||||
| treeview: |  | ||||
| @ -1,111 +0,0 @@ | |||||
| #!/bin/sh |  | ||||
| 
 |  | ||||
| # Slackware build script for treeview |  | ||||
| 
 |  | ||||
| # Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com |  | ||||
| # All rights reserved. |  | ||||
| # |  | ||||
| # Redistribution and use of this script, with or without modification, is |  | ||||
| # permitted provided that the following conditions are met: |  | ||||
| # |  | ||||
| # 1. Redistributions of this script must retain the above copyright |  | ||||
| #    notice, this list of conditions and the following disclaimer. |  | ||||
| # |  | ||||
| #  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED |  | ||||
| #  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF |  | ||||
| #  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO |  | ||||
| #  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, |  | ||||
| #  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, |  | ||||
| #  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; |  | ||||
| #  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, |  | ||||
| #  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR |  | ||||
| #  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF |  | ||||
| #  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |  | ||||
| 
 |  | ||||
| PRGNAM=treeview |  | ||||
| VERSION=${VERSION:-0.5.1} |  | ||||
| BUILD=${BUILD:-1} |  | ||||
| TAG=${TAG:-_SBo} |  | ||||
| 
 |  | ||||
| SRCNAM=tv |  | ||||
| 
 |  | ||||
| if [ -z "$ARCH" ]; then |  | ||||
|   case "$( uname -m )" in |  | ||||
|     i?86) export ARCH=i586 ;; |  | ||||
|     arm*) export ARCH=arm ;; |  | ||||
|        *) export ARCH=$( uname -m ) ;; |  | ||||
|   esac |  | ||||
| fi |  | ||||
| 
 |  | ||||
| CWD=$(pwd) |  | ||||
| TMP=${TMP:-/tmp/SBo} |  | ||||
| PKG=$TMP/package-$PRGNAM |  | ||||
| OUTPUT=${OUTPUT:-/tmp} |  | ||||
| 
 |  | ||||
| if [ "$ARCH" = "i586" ]; then |  | ||||
|   SLKCFLAGS="-O2 -march=i586 -mtune=i686" |  | ||||
|   LIBDIRSUFFIX="" |  | ||||
| elif [ "$ARCH" = "i686" ]; then |  | ||||
|   SLKCFLAGS="-O2 -march=i686 -mtune=i686" |  | ||||
|   LIBDIRSUFFIX="" |  | ||||
| elif [ "$ARCH" = "x86_64" ]; then |  | ||||
|   SLKCFLAGS="-O2 -fPIC" |  | ||||
|   LIBDIRSUFFIX="64" |  | ||||
| else |  | ||||
|   SLKCFLAGS="-O2" |  | ||||
|   LIBDIRSUFFIX="" |  | ||||
| fi |  | ||||
| 
 |  | ||||
| set -e |  | ||||
| 
 |  | ||||
| rm -rf $PKG |  | ||||
| mkdir -p $TMP $PKG $OUTPUT |  | ||||
| cd $TMP |  | ||||
| rm -rf $SRCNAM-$VERSION |  | ||||
| tar xvf $CWD/$SRCNAM-$VERSION.tar.gz |  | ||||
| cd $SRCNAM-$VERSION |  | ||||
| chown -R root:root . |  | ||||
| find -L . \ |  | ||||
|  \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ |  | ||||
|   -o -perm 511 \) -exec chmod 755 {} \; -o \ |  | ||||
|  \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ |  | ||||
|   -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; |  | ||||
| 
 |  | ||||
| # Disable SVG support. If you want it, you should build |  | ||||
| # wxGTK or wxPython including svg from contrib/src/svg |  | ||||
| # Then, of course comment the next line. |  | ||||
| sed "s:USE_SVG=1:USE_SVG=0:" -i configure |  | ||||
| 
 |  | ||||
| patch -p1 < $CWD/cstring.patch |  | ||||
| 
 |  | ||||
| CFLAGS="$SLKCFLAGS" \ |  | ||||
| CXXFLAGS="$SLKCFLAGS -fpermissive" \ |  | ||||
| ./configure \ |  | ||||
|   --prefix=/usr \ |  | ||||
|   --libdir=/usr/lib${LIBDIRSUFFIX} \ |  | ||||
|   --sysconfdir=/etc \ |  | ||||
|   --localstatedir=/var \ |  | ||||
|   --mandir=/usr/man \ |  | ||||
|   --build=$ARCH-slackware-linux |  | ||||
| 
 |  | ||||
| make |  | ||||
| make install DESTDIR=$PKG |  | ||||
| 
 |  | ||||
| find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ |  | ||||
|   | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true |  | ||||
| 
 |  | ||||
| mkdir -p $PKG/usr/share/{applications,pixmaps} |  | ||||
| cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications |  | ||||
| cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps |  | ||||
| 
 |  | ||||
| mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION |  | ||||
| cp -a COPYING INSTALL $PKG/usr/doc/$PRGNAM-$VERSION |  | ||||
| cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References |  | ||||
| cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild |  | ||||
| 
 |  | ||||
| mkdir -p $PKG/install |  | ||||
| cat $CWD/slack-desc > $PKG/install/slack-desc |  | ||||
| cat $CWD/doinst.sh > $PKG/install/doinst.sh |  | ||||
| 
 |  | ||||
| cd $PKG |  | ||||
| /sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} |  | ||||
| @ -1,8 +0,0 @@ | |||||
| [Desktop Entry] |  | ||||
| Categories=Education; |  | ||||
| Exec=tv |  | ||||
| Icon=treeview |  | ||||
| Name=TreeView X |  | ||||
| StartupNotify=false |  | ||||
| Type=Application |  | ||||
| GenericName= |  | ||||
| @ -1,10 +0,0 @@ | |||||
| PRGNAM="treeview" |  | ||||
| VERSION="0.5.1" |  | ||||
| HOMEPAGE="http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/" |  | ||||
| DOWNLOAD="http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz" |  | ||||
| MD5SUM="07e1ed8873c5f19ded7294668233bae1" |  | ||||
| DOWNLOAD_x86_64="" |  | ||||
| MD5SUM_x86_64="" |  | ||||
| REQUIRES="wxPython" |  | ||||
| MAINTAINER="Petar Petrov" |  | ||||
| EMAIL="slackalaxy@gmail.com" |  | ||||
| Before Width: 128 | Height: 128 | Size: 17 KiB | 
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